| _allFilesAdded | PndLmdAlignManager | private |
| _binaryPairFileDirectory | PndLmdAlignManager | private |
| _enableHelperMatrix | PndLmdAlignManager | private |
| _firstInitDone | PndLmdAlignManager | private |
| _i | PndLmdAlignManager | private |
| _inCentimeters | PndLmdAlignManager | private |
| _info | PndLmdAlignManager | private |
| _matrixOutDir | PndLmdAlignManager | private |
| _multithreaded | PndLmdAlignManager | private |
| _n | PndLmdAlignManager | private |
| _r | PndLmdAlignManager | private |
| _singleAligner | PndLmdAlignManager | private |
| _verboseLevel | PndLmdAlignManager | private |
| _w | PndLmdAlignManager | private |
| _zIsTimestamp | PndLmdAlignManager | private |
| addFile(std::string filename) | PndLmdAlignManager | |
| addFilesFromDirectory(std::string directory, int maxFiles=0) | PndLmdAlignManager | |
| addPairAndStartAligner(PndLmdHitPair &pair) | PndLmdAlignManager | |
| alignAllSensors() | PndLmdAlignManager | |
| aligners | PndLmdAlignManager | private |
| alignersFull | PndLmdAlignManager | private |
| alignMT() | PndLmdAlignManager | private |
| alignOne(PndLmdSensorAligner &aligner) | PndLmdAlignManager | private |
| alignST() | PndLmdAlignManager | private |
| allAlignersDone | PndLmdAlignManager | private |
| castTGeoHMatrixToMatrix(const TGeoHMatrix &matrix) | PndLmdAlignManager | static |
| checkForBinaryFiles() | PndLmdAlignManager | |
| checkForLmdMatrixFiles() | PndLmdAlignManager | |
| checkIOpaths() | PndLmdAlignManager | private |
| clearPairs() | PndLmdAlignManager | |
| clearScreen() | PndLmdAlignManager | static |
| exists(std::string file) | PndLmdAlignManager | static |
| fileNames | PndLmdAlignManager | private |
| findRegex(std::string source, std::string regex) | PndLmdAlignManager | static |
| incrementMTLB() | PndLmdAlignManager | private |
| init() | PndLmdAlignManager | |
| loadBar(int current, int total, int resolution, int width, std::string message="") | PndLmdAlignManager | static |
| makeBinaryPairFileName(int overlapId=0, bool incentimeters=true) | PndLmdAlignManager | privatestatic |
| makeMatrixFileName(int overlapId=0, bool incentimeters=true) | PndLmdAlignManager | privatestatic |
| mapIt typedef | PndLmdAlignManager | private |
| mkdir(std::string path) | PndLmdAlignManager | static |
| outFilename | PndLmdAlignManager | private |
| overlapIDs | PndLmdAlignManager | private |
| PndLmdAlignManager() | PndLmdAlignManager | |
| PndLmdAlignQA class | PndLmdAlignManager | friend |
| PndLmdSensorAligner class | PndLmdAlignManager | friend |
| readConfigFile(std::string filename) | PndLmdAlignManager | static |
| readFile(std::string filename) | PndLmdAlignManager | static |
| readFilesAndAlign() | PndLmdAlignManager | |
| readFromCSVFile(std::string filename) | PndLmdAlignManager | static |
| readMatrix(std::string filename) | PndLmdAlignManager | static |
| readPairsFromBinaryFiles() | PndLmdAlignManager | |
| readPairsFromChainMT(std::vector< std::string > files, std::map< int, PndLmdSensorAligner > &aligners, PndLmdAlignManager &manager) | PndLmdAlignManager | privatestatic |
| resetMTLB(int n, int r, int w) | PndLmdAlignManager | private |
| searchDirectories(std::string curr_directory, std::vector< std::string > &list, bool includeSubDirs=true) | PndLmdAlignManager | static |
| searchFiles(std::string curr_directory, std::vector< std::string > &list, std::string extension="", bool includeSubDirs=true) | PndLmdAlignManager | static |
| setBinaryPairFileDirectory(const std::string &binaryPairFileDirectory) | PndLmdAlignManager | inline |
| setInCentimeters(bool inCentimeters) | PndLmdAlignManager | |
| setMatrixOutDir(std::string matrixOutDir) | PndLmdAlignManager | inline |
| setMaxPairs(int maxPairs) | PndLmdAlignManager | |
| setOutFilename(const std::string &filename) | PndLmdAlignManager | inline |
| setSingleAligner(bool singleAligner) | PndLmdAlignManager | inline |
| setStartAlignerWhenFull(bool value) | PndLmdAlignManager | inline |
| setZasTimestamp(bool timestamp) | PndLmdAlignManager | |
| startAlignerWhenFull | PndLmdAlignManager | private |
| validate() | PndLmdAlignManager | |
| verboseLevel(int verbose) | PndLmdAlignManager | inline |
| verbosePrint(std::string input, int level=3) | PndLmdAlignManager | private |
| waitForCompletion() | PndLmdAlignManager | |
| workerThread(boost::shared_ptr< boost::asio::io_service > io_service) | PndLmdAlignManager | |
| writeConfigFile(boost::property_tree::ptree configTree, std::string filename, bool replaceExisting=true) | PndLmdAlignManager | static |
| writeMatrix(Matrix &mat, std::string filename) | PndLmdAlignManager | static |
| writePairsToBinaryFiles() | PndLmdAlignManager | |
| ~PndLmdAlignManager() | PndLmdAlignManager | virtual |
